Prepare module armarx/VisionX fails, links to target "VTK::CommonCore" but the target was not found.
Bug Report
Summary and Bug Description
When upgrading an axii workspace, at step: prepare module armarx/VisionX is thrown, stating the following:
Following the axii troubleshooting steps didn't resolve the problem. Neither did adding deps/vtk manually.
Current Behavior
See bug description
Expected Behavior
Successful build
Steps to Reproduce
Create axii workspace, add VisionX and upgrade (Ubuntu 18 or 22)
Diagnosis
axii self report output: ┏━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Scope ┃ Info ┃ ┡━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ │ Axii │ Version: 25.01.1.0 │ │ │ Release: stable-0 │ │ │ Install: global │ │ │ Shell integration: active │ │ OS │ Ubuntu 18.04.6 LTS │ │ Kernel │ Linux 5.4.0-150-generic #167 (closed)~18.04.1-Ubuntu SMP Wed May 24 00:51:42 │ │ │ UTC 2023 x86_64 GNU/Linux │ │ Shell │ /bin/bash │ │ Python │ Python 3.6.9 │ │ Pip │ certifi==2024.12.14, charset-normalizer==2.0.12, click==8.0.0, │ │ │ commonmark==0.9.1, cycler==0.11.0, dataclasses==0.8, │ │ │ dbus-python==1.2.18, decorator==5.1.1, distro==1.7.0, gitdb==4.0.9, │ │ │ GitPython==3.1.18, idna==3.10, igraph==0.9.11, │ │ │ importlib-metadata==4.8.3, kiwisolver==1.3.1, matplotlib==3.3.0, │ │ │ networkx==2.5, notify2==0.3.1, numpy==1.19.0, Pillow==8.4.0, │ │ │ pkg_resources==0.0.0, psutil==5.9.4, Pygments==2.14.0, │ │ │ pygraphviz==1.6, pyparsing==3.1.4, PyQt5==5.15.0, │ │ │ PyQt5-sip==12.9.1, python-dateutil==2.9.0.post0, │ │ │ python-igraph==0.9.11, python-Levenshtein==0.12.2, │ │ │ requests==2.26.0, rich==12.6.0, rich-click==1.2.1, six==1.17.0, │ │ │ smmap==5.0.0, texttable==1.7.0, thefuzz==0.19.0, │ │ │ typing_extensions==4.1.1, urllib3==1.26.20, xdg==5.1.1, zipp==3.6.0 │ └────────┴─────────────────────────────────────────────────────────────────────┘
Error message: see bug description
More Relevant Logs or Screenshots
Activity
On ARMAR-6 r0 (RT-PC):
Circumstances are:
- Recent upgrade of axii (on main)
- A cleaned workspace
- No local changes
[Click to show/hide diagnosis output]
Axii w verify is clean**:Verification completed. No problems found.axii self report*:
┏━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ ┃ Scope ┃ Info ┃ ┡━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┩ │ Axii │ Version: 25.01.1.0 │ │ │ Release: main-0 │ │ │ Install: global │ │ │ Shell integration: active │ │ OS │ Ubuntu 18.04.5 LTS │ │ Kernel │ Linux 4.14.93-rt53-r0 #1 SMP PREEMPT RT Wed Jan 30 17:45:40 CET │ │ │ 2019 x86_64 GNU/Linux │ │ Shell │ /bin/bash │ │ Python │ Python 3.6.9 │ │ Pip │ certifi==2024.8.30, charset-normalizer==2.0.12, click==8.0.0, │ │ │ commonmark==0.9.1, cycler==0.11.0, dataclasses==0.8, │ │ │ dbus-python==1.2.18, decorator==5.1.1, distro==1.7.0, gitdb==4.0.9, │ │ │ GitPython==3.1.18, idna==3.10, igraph==0.9.11, │ │ │ importlib-metadata==4.8.3, kiwisolver==1.3.1, matplotlib==3.3.0, │ │ │ networkx==2.5, notify2==0.3.1, numpy==1.19.0, Pillow==8.4.0, │ │ │ pkg_resources==0.0.0, psutil==5.9.4, Pygments==2.14.0, │ │ │ pygraphviz==1.6, pyparsing==3.1.4, PyQt5==5.15.0, │ │ │ PyQt5-sip==12.9.1, python-dateutil==2.9.0.post0, │ │ │ python-igraph==0.9.11, python-Levenshtein==0.12.2, │ │ │ requests==2.26.0, rich==12.6.0, rich-click==1.2.1, six==1.16.0, │ │ │ smmap==5.0.0, texttable==1.7.0, thefuzz==0.19.0, │ │ │ typing_extensions==4.1.1, urllib3==1.26.20, xdg==5.1.1, zipp==3.6.0 │ └────────┴─────────────────────────────────────────────────────────────────────┘* In addition, the following error occurs multiple times - this is new to me, but I would potentially blame the RT patch / would not consider it as the reason for the problem, as @nutto seems to have the same VTK error message without this axii errors
Handled 'OSError' in '/home/armar-user/axii_eurobin/armarx_setup/core/util/commands.py':339 ('execute'). On some systems, OSError with errno = EIO is thrown to indicate EOF on stdin, stdout or stderr.** Further errors occurred multiple times that seemed not to interfer with the verification itself:
Handled 'AttributeError' in '/home/armar-user/axii_eurobin/armarx_setup/core/module/module.py':218 ('get_database_module'). Most modules are not database module and thus do not have the 'general.database' attribute.and (also with other versions)
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮ │ /home/armar-user/axii_eurobin/.venv_bionic/lib/python3.6/site-packages/git/util.py:984 in │ │ __getitem__ │ │ │ │ 981 │ │ │ raise ValueError("Index should be an int or str") │ │ 982 │ │ else: │ │ 983 │ │ │ try: │ │ ❱ 984 │ │ │ │ return getattr(self, index) │ │ 985 │ │ │ except AttributeError as e: │ │ 986 │ │ │ │ raise IndexError("No item found with id %r" % (self._prefix + index)) fr │ │ 987 │ │ # END handle getattr │ │ │ │ /home/armar-user/axii_eurobin/.venv_bionic/lib/python3.6/site-packages/git/util.py:972 in │ │ __getattr__ │ │ │ │ 969 │ │ │ if getattr(item, self._id_attr) == attr: │ │ 970 │ │ │ │ return item │ │ 971 │ │ # END for each item │ │ ❱ 972 │ │ return list.__getattribute__(self, attr) │ │ 973 │ │ │ 974 │ def __getitem__(self, index: Union[SupportsIndex, int, slice, str]) -> Any: │ │ 975 │ ╰──────────────────────────────────────────────────────────────────────────────────────────────────╯ AttributeError: 'IterableList' object has no attribute 'origin/[#808080]tag:[/] r3.2.1' The above exception was the direct cause of the following exception: ╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮ │ /home/armar-user/axii_eurobin/armarx_setup/core/git.py:466 in repo_status │ │ │ │ 463 │ │ │ │ │ │ is_accessible = True │ │ 464 │ │ │ │ │ 465 │ │ │ try: │ │ ❱ 466 │ │ │ │ branch_remote = origin.refs[active_branch_name] │ │ 467 │ │ │ except IndexError: # Does not exist on remote. │ │ 468 │ │ │ │ error.handle_exception() │ │ 469 │ │ │ else: │ │ │ │ /home/armar-user/axii_eurobin/.venv_bionic/lib/python3.6/site-packages/git/util.py:986 in │ │ __getitem__ │ │ │ │ 983 │ │ │ try: │ │ 984 │ │ │ │ return getattr(self, index) │ │ 985 │ │ │ except AttributeError as e: │ │ ❱ 986 │ │ │ │ raise IndexError("No item found with id %r" % (self._prefix + index)) fr │ │ 987 │ │ # END handle getattr │ │ 988 │ │ │ 989 │ def __delitem__(self, index: Union[SupportsIndex, int, slice, str]) -> Any: │ ╰──────────────────────────────────────────────────────────────────────────────────────────────────╯ IndexError: No item found with id 'origin/[#808080]tag:[/] r3.2.1'Cmake failure in VisionX is:
-- The following features have been enabled: ... -- The following OPTIONAL packages have been found: ... -- The following REQUIRED packages have been found: * ArmarXCore ... * VTK ... -- The following features have been disabled: ... -- The following OPTIONAL packages have not been found: ... == Check generated files and remove them if necessary ... == -- ICE summary: No mismatches found. -- ARON summary: No mismatches found. -- Checking done -- Configuring done ❗ CMake Error at /home/armar-user/code_eurobin/armarx/ArmarXCore/etc/cmake/legacy/ArmarXCommands.cmake:180 (add_library): ❗ Target "PointCloudViewerGuiPlugin" links to target "VTK::CommonCore" but ❗ the target was not found. Perhaps a find_package() call is missing for an ❗ IMPORTED target, or an ALIAS target is missing? ❗ Call Stack (most recent call first): ❗ /home/armar-user/code_eurobin/armarx/ArmarXCore/etc/cmake/legacy/ArmarXCommands.cmake:101 (armarx_create_library) ❗ /home/armar-user/code_eurobin/armarx/ArmarXGui/etc/cmake/legacy/GuiCommands.cmake:52 (armarx_add_library) ❗ source/VisionX/gui-plugins/PointCloudViewer/CMakeLists.txt:45 (armarx_gui_library) ❗ ❗ -- Generating done ❗ CMake Generate step failed. Build files cannot be regenerated correctly. CommandFailed: Running 'cmake -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=FALSE -DCMAKE_BUILD_TYPE=Release -DARMARX_BUILD_TESTS=OFF -DCMAKE_C_COMPILER_LAUNCHER=/usr/bin/ccache -DCMAKE_CXX_COMPILER_LAUNCHER=/usr/bin/ccache -DCMAKE_C_COMPILER=/usr/bin/gcc-8 -DCMAKE_CXX_COMPILER=/usr/bin/g++-8 ..' in '/home/armar-user/code_eurobin/armarx/VisionX/build' failed with return code 1.In the list of found and not found packages, I could not see any mention of ArmarXGui, just of ArmarXCore and VTK as listed above. As ArmarXGui occurs in the call stack, I find this a bit strange. Furthermore, I am surprised that VisionX, and its gui-plugins, are even installed on a robot's real time PC.
Other than @nutto, I have not yet tried out to add further packages.
Edited by Tilman DaabIn the Axii module of VisionX, for Ubuntu 18.04 (bionic), which I was using, VTK is not even a dependency (https://git.h2t.iar.kit.edu/sw/armarx/meta/axii/-/blob/main/data/modules/armarx/VisionX.json?ref_type=heads ):
"VTK_DIR": { "axii.switch_os": { "noble": "$VTK_DIR", "jammy": "$VTK_DIR", "default": null } }A recent change had been made to the Axii module of deps/vtk, adding an OS-version based distinction between paths (772702ed):
"VTK_DIR": { "axii.switch_os": { "jammy": "$MODULE_PATH/build/install/usr/local/lib/cmake/vtk-9.1", "noble": "$MODULE_PATH/build/install/usr/local/lib/cmake/vtk-9.3", "default": "$MODULE_PATH/build/install/usr/local/lib/cmake/vtk-9.0" } }On the system I used, the variable $VTK_DIR is undefined/empty. In the workspace, the directory
deps/vtkdoes not exist. On a system level,vtk6is installed (apt search vtk | grep installed).Edited by Tilman Daab
