Update usages of apt/eigen3 to deps/eigen3

data/modules/affordance-kit.json

data/modules/deps/autodiff.json

data/modules/deps/cartographer.json

data/modules/deps/ceres.json

data/modules/deps/dlr_3d_object_tracking/icg.json

data/modules/dmp.json

data/modules/h2t/InteractiveSceneExploration.json

...modules/h2t/human_aware_navigation/teb_local_planner.json

data/modules/mmm/core.json

data/modules/mmm/tools.json

data/modules/mplib.json

data/modules/research/probabilistic-support-relations.json

data/modules/semantic-object-relations.json

data/modules/simox-control.json

data/modules/simox.json